Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs7664056 chr4:80132 A/G 7.74E-6 494 30.87 30.8 39.23 KM Plot
PRAD rs76674755 chr8:104049541 G/A 2.9E-12 486 31.18 28.18 18.15 KM Plot
PRAD rs7668227 chr4:187061084 G/A 1.34E-6 491 28.07 28.22 31.2 KM Plot
PRAD rs76711100 chr22:18447970 G/A 2.32E-6 485 30.8 31.9 26.37 KM Plot
PRAD rs76711309 chr2:107436841 A/G 1.49E-5 489 30.93 30.7 32.63 KM Plot
PRAD rs76722680 chr12:52877890 G/A 1.08E-7 480 30.23 35.77 23.67 KM Plot
PRAD rs76742954 chr9:72885465 G/C 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs76751817 chr2:178802386 T/C 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs76755770 chr5:154234929 G/A 0 493 30.08 36.05 4.87 KM Plot
PRAD rs76784767 chr2:239196000 C/A 8.93E-6 487 31 30.35 11.57 KM Plot
PRAD rs7678633 chr4:69713 C/T 2.07E-9 494 30.8 31.13 33.23 KM Plot
PRAD rs76842023 chr11:6924093 G/C 9.85E-13 491 30.87 29.97 18.13 KM Plot
PRAD rs76860108 chr11:51267033 C/T 1.89E-8 482 31.3 28.05 24.27 KM Plot
PRAD rs7686019 chr4:187060138 T/C 4.27E-5 479 30.23 27.95 31.27 KM Plot
PRAD rs7686026 chr4:187060147 T/C 3.61E-5 485 30.23 28.3 31.2 KM Plot